Specify specific variants in group file

zhanxw / rvtests

Rare variant test software for next generation sequencing data

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Specify specific variants in group file #83

Open wavefancy opened 5 years ago

wavefancy commented 5 years ago

Hi @zhanxw,

Is it possible to specify specific variants in each group (for example epacts format like), other than just specify by range? It's better to have chr:pos:ref:alt like format to have the ability to distinguish multi-allelic alleles.

Thank you very much!

Best regards Wallace

jmerkin commented 5 years ago

Just want to bring attention to this issue. Seems like a pretty standard request to want to do some of our own filtering on the variants used in the analysis.

zhanxw commented 4 years ago

That's a good suggestion. What do you think @dajiangliu ?