BGEN to Matrix variant IDs

zhanxw / seqminer

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

http://zhanxw.github.io/seqminer/

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BGEN to Matrix variant IDs #19

Open joshuahoffman39 opened 3 years ago

joshuahoffman39 commented 3 years ago

Hi @zhanxw,

Would it be possible to add some additional granularity to the bgen to matrix variant ID format? Right now, the IDs are chrom:pos, but having the SNPID type format of CHR:POS:REF:ALT would be helpful.

Thanks!

Josh