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zhaofenqiang / Spherical_U-Net

Spherical U-Net for icosahedron discretized spherical surface data
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Could you share the raw data and the processed data #3

Closed zshyang closed 3 years ago

zshyang commented 3 years ago

How to do fold in your data set? https://github.com/zhaofenqiang/Spherical_U-Net/blob/5623f2d9a29d4d3de396cf67f0bf9cb5aea76ec6/train.py#L77

zhaofenqiang commented 3 years ago

Hi, @zshyang, the data we used can be found here, https://www.insight-journal.org/midas/item/view/2467

zshyang commented 3 years ago

hi, @zhaofenqiang , thanks for sharing. Do you use 41 subjects in your work? And how to convert the raw data to vtk data? Thank you. Best

zhaofenqiang commented 3 years ago

@zshyang, we actually used two datasets in our work. The other one is not publicly available now. Therefore I only share this 41 subjects dataset with you.

You can use read_curv and read_surf in Freesurfer to read the Freesurfer's surface and use the mvtk_write to write the surface to vtk format. You can find more useful information in this repository. It is written in Matlab.

Also, there are read_vtk and write_vtk in this repository here using Python. Hope it helps!

If you find it is useful, please don't forget to cite our work😊.

zhaofenqiang commented 3 years ago

How to do fold in your data set? https://github.com/zhaofenqiang/Spherical_U-Net/blob/5623f2d9a29d4d3de396cf67f0bf9cb5aea76ec6/train.py#L77

This was done randomly. We just split all data randomly into 5 or 6 folds.