Error while updating the package

[nikosGeography]

On Windows 10 laptop I tried to update terra to it's latest varsion (v 0.9.9) but I am getting this error:

C:\Users\GEOGRA~1\AppData\Local\Temp\ccLwEwDN.s: Assembler messages:
C:\Users\GEOGRA~1\AppData\Local\Temp\ccLwEwDN.s:13: Error: unsupported instruction `movq'
C:\Users\GEOGRA~1\AppData\Local\Temp\ccLwEwDN.s:393: Error: unsupported instruction `movq'
make: *** [C:/PROGRA~1/R/R-41~1.1/etc/i386/Makeconf:238: abc_pthread.o] Error 1
ERROR: compilation failed for package 'Rbeast'
* removing 'C:/Program Files/R/R-4.1.1/library/Rbeast'
* restoring previous 'C:/Program Files/R/R-4.1.1/library/Rbeast'
Warning in install.packages :
  installation of package ‘Rbeast’ had non-zero exit status

I tried updating the package through RStudio. Currently, I am having the v 0.9.7 installed. I am using RStudio Version 1.4.1717 and R v 4.1.1. Any ideas why this error? The RTools is properly installed on my machine. Ican test this by:

Sys.which('make')
                              make 
"C:\\rtools40\\usr\\bin\\make.exe" 

Here is the output of the sessionInfo():

R version 4.1.1 (2021-08-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_4.1.1 cli_3.6.1      tools_4.1.1 

[zhaokg]

Dear Nikolaos,

Thanks for letting me know the error. You first mentioned that " you tried to update terra to its latest version“。 If I got it correctly, you meant to say "Rbeast” instead of "terra".

I also assume you are installing fromt the source. In most probability, your Rtools are not appropriately installed. Or the version of Rtools is not compatible with the R version. In the past one year or two, R's team updated the Rtool significantly. Here is the latest version: https://cran.r-project.org/bin/windows/Rtools/rtools43/rtools.html,,

The compilation failed at C:/PROGRA~1/R/R-41~1.1/etc/i386/Makeconf. Notice the "i386" in the path. Basically, you are compiling a 64-bit program with the 32-bit maefile (i.e."i386/Makeconf"), which is bound to give your errors of all sorts. The correct makefile for 64-bit program should be “ C:/PROGRA~1/R/R-41~1.1/etc/x64/Makeconf”.

Not sure how this will help. My first suggestion is to get a latest version of the Rtool. If not working, please let me know and we can discuss about possible solutions.

Best, Kaiguang

On Mon, Jun 26, 2023 at 8:01 AM Nikolaos Tziokas @.***> wrote:

On Windows 10 laptop I tried to update terra to it's latest varsion (v 0.9.9) but I am getting this error:

C:\Users\GEOGRA~1\AppData\Local\Temp\ccLwEwDN.s: Assembler messages: C:\Users\GEOGRA~1\AppData\Local\Temp\ccLwEwDN.s:13: Error: unsupported instruction movq' C:\Users\GEOGRA~1\AppData\Local\Temp\ccLwEwDN.s:393: Error: unsupported instructionmovq' make: *** [C:/PROGRA~1/R/R-41~1.1/etc/i386/Makeconf:238: abc_pthread.o] Error 1 ERROR: compilation failed for package 'Rbeast'

• removing 'C:/Program Files/R/R-4.1.1/library/Rbeast'
• restoring previous 'C:/Program Files/R/R-4.1.1/library/Rbeast' Warning in install.packages : installation of package ‘Rbeast’ had non-zero exit status

I tried updating the package through RStudio. Currently, I am having the v 0.9.7 installed. I am using RStudio Version 1.4.1717 and R v 4.1.1. Any ideas why this error? The RTools is properly installed on my machine. Ican test this by:

Sys.which('make') make "C:\rtools40\usr\bin\make.exe"

Here is the output of the sessionInfo():

R version 4.1.1 (2021-08-10) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] compiler_4.1.1 cli_3.6.1 tools_4.1.1

— Reply to this email directly, view it on GitHub https://github.com/zhaokg/Rbeast/issues/10, or unsubscribe https://github.com/notifications/unsubscribe-auth/AF27X34D3Z5CVPZYZVXP3LTXNF23NANCNFSM6AAAAAAZUBZVVI . You are receiving this because you are subscribed to this thread.Message ID: @.***>

--

Kaiguang Zhao, PhD Associate Professor School of Environment and Natural Resources Ohio Agricultural Research and Development Center, The Ohio State University

@.** 330-263-3722 <(330)%20263-3722>* Office

[zhaokg]

ALso, not sure how you installed the pacakge. But here is what I recommend doing:

Run the following three lines to remove any current installed or load package

unloadNamespace('Rbeast') # if "Rbeast" is loaded into the memory, unload it. It is OK if you get an error detach(package:Rbeast,unload=T) # if "Rbeast" is loaded into the memory, deattach it. It is OK if you get an error remove.packages("Rbeast") # Remove Rbeast from the harddisk

install.packages("Rbeast") # Do not use R CMD INSTALL --build in the Win10 console

[nikosGeography]

I fixed the issue by updating to the latest Rand RTools version. Then I used the install.packages("Rbeast") command and I was able to get the latest version. Finally, I made sure that I am using the x64 version (the makefile you mentioned in your comment above).