What steps will reproduce the problem?
1. given the following two bed files:
==> a.bed <==
chr1 14500 15004 g1 0 +
==> b.bed <==
chr1 14935 14980 FUS 1 +
2. bedtools intersect -c -s -a a.bed -b c.bed | cut -f7
What is the expected output? What do you see instead?
expected: 1
obtained: 0
What version of the product are you using? On what operating system?
bedtools v2.17.0
Please provide any additional information below.
when given the opposite strand with the -S option, the result is 1.
curiously enough, when I add three fields to b.bed making it a bed9, the
problem is solved.
Original issue reported on code.google.com by martino....@gmail.com on 2 Jul 2015 at 9:01
Original issue reported on code.google.com by
martino....@gmail.com
on 2 Jul 2015 at 9:01