zhaoyanswill / RAPSearch2

Reduced Alphabet based Protein similarity Search
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Stalling on dataset with ambiguous nucleotides #11

Open franzosa opened 9 years ago

franzosa commented 9 years ago

After upgrading to the newest version of RAPSearch2 I've noticed an issue where the program hangs when searching a dataset that includes DNA reads with many "N" (ambiguous) characters against a large protein database. I was able to search these reads against the same database using the previous version of RAPSearch2. Thank you in advance for your help.