zhaoyanswill / RAPSearch2

Reduced Alphabet based Protein similarity Search
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install issue in mac Sierra 10.12 #36

Open xiaoxu9907 opened 7 years ago

xiaoxu9907 commented 7 years ago

I want to install RAPSearch in my mac pro. And thanks to the discussion forum, I installed the gcc49 and boost in my computer in advance. but I still got a error and fail to install it. Could you please give me some help? Following information is my result:

RAPSearch installer rm -f *.o rapsearch prerapsearch g++ -c -O3 -w HashSearch.cpp -o HashSearch.o -I ./ g++ -c -O3 -w BlastStat.cpp -o BlastStat.o -I ./ g++ -c -O3 -w Seg.cpp -o Seg.o -I ./ g++ -c -O3 -w mergeUnit.cpp -o mergeUnit.o -I ./ g++ -O3 -w -o rapsearch main.cpp HashSearch.o BlastStat.o Seg.o mergeUnit.o -I ./ -L ./ -lboost_serialization -lpthread -lboost_thread -lboost_system -lboost_chrono error: unable to open output file 'Src/main-cb7e04.o': 'No such file or directory' 1 error generated. make: *** [rapsearch] Error 1 A local bin directory already exists, do you wish to overwrite? (Y/N)Y mv: rename Src/rapsearch to bin/rapsearch: No such file or directory mv: rename Src/prerapsearch to bin/prerapsearch: No such file or directory

Executables are now installed under bin/

I really appreciate your help. Kind regards Xu Xiao

zhaoyanswill commented 7 years ago

Sorry for the late reply!

I’m looking into the problem. Could you try to use home-brew to install it? Thanks!

On Sep 1, 2017, at 4:25 AM, xiaoxu9907 notifications@github.com wrote:

I want to install RAPSearch in my mac pro. And thanks to the discussion forum, I installed the gcc49 and boost in my computer in advance. but I still got a error and fail to install it. Could you please give me some help? Following information is my result:

RAPSearch installer rm -f *.o rapsearch prerapsearch g++ -c -O3 -w HashSearch.cpp -o HashSearch.o -I ./ g++ -c -O3 -w BlastStat.cpp -o BlastStat.o -I ./ g++ -c -O3 -w Seg.cpp -o Seg.o -I ./ g++ -c -O3 -w mergeUnit.cpp -o mergeUnit.o -I ./ g++ -O3 -w -o rapsearch main.cpp HashSearch.o BlastStat.o Seg.o mergeUnit.o -I ./ -L ./ -lboost_serialization -lpthread -lboost_thread -lboost_system -lboost_chrono error: unable to open output file 'Src/main-cb7e04.o': 'No such file or directory' 1 error generated. make: *** [rapsearch] Error 1 A local bin directory already exists, do you wish to overwrite? (Y/N)Y mv: rename Src/rapsearch to bin/rapsearch: No such file or directory mv: rename Src/prerapsearch to bin/prerapsearch: No such file or directory

Executables are now installed under bin/

I really appreciate your help. Kind regards Xu Xiao

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/zhaoyanswill/RAPSearch2/issues/36, or mute the thread https://github.com/notifications/unsubscribe-auth/AETkp0R_eKuP91FAcroqjlAhGgj6QzTjks5sd79jgaJpZM4PJ2aq.

xiaoxu9907 commented 7 years ago

Dear, Thanks for the reply. I am trying to do that. Did you mean $ brew install RAPSearch2? I am not sure is that a correct command? Should I need to enter the RAPSearch2.12_64bit folder and do that? I am waiting for the results and will tell you if that works. Thanks a lot! Kind regards, Xu

在 2017年9月5日,21:00,zhaoyanswill notifications@github.com<mailto:notifications@github.com> 写道:

Sorry for the late reply!

I’m looking into the problem. Could you try to use home-brew to install it? Thanks!

On Sep 1, 2017, at 4:25 AM, xiaoxu9907 notifications@github.com<mailto:notifications@github.com> wrote:

I want to install RAPSearch in my mac pro. And thanks to the discussion forum, I installed the gcc49 and boost in my computer in advance. but I still got a error and fail to install it. Could you please give me some help? Following information is my result:

RAPSearch installer rm -f *.o rapsearch prerapsearch g++ -c -O3 -w HashSearch.cpp -o HashSearch.o -I ./ g++ -c -O3 -w BlastStat.cpp -o BlastStat.o -I ./ g++ -c -O3 -w Seg.cpp -o Seg.o -I ./ g++ -c -O3 -w mergeUnit.cpp -o mergeUnit.o -I ./ g++ -O3 -w -o rapsearch main.cpp HashSearch.o BlastStat.o Seg.o mergeUnit.o -I ./ -L ./ -lboost_serialization -lpthread -lboost_thread -lboost_system -lboost_chrono error: unable to open output file 'Src/main-cb7e04.o': 'No such file or directory' 1 error generated. make: *** [rapsearch] Error 1 A local bin directory already exists, do you wish to overwrite? (Y/N)Y mv: rename Src/rapsearch to bin/rapsearch: No such file or directory mv: rename Src/prerapsearch to bin/prerapsearch: No such file or directory

Executables are now installed under bin/

I really appreciate your help. Kind regards Xu Xiao

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/zhaoyanswill/RAPSearch2/issues/36, or mute the thread https://github.com/notifications/unsubscribe-auth/AETkp0R_eKuP91FAcroqjlAhGgj6QzTjks5sd79jgaJpZM4PJ2aq.

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zhaoyanswill commented 7 years ago

You may want to take a look at the instruction of brew science (https://github.com/Homebrew/homebrew-science)

On Sep 5, 2017, at 9:48 AM, xiaoxu9907 notifications@github.com wrote:

Dear, Thanks for the reply. I am trying to do that. Did you mean $ brew install RAPSearch2? I am not sure is that a correct command? Should I need to enter the RAPSearch2.12_64bit folder and do that? I am waiting for the results and will tell you if that works. Thanks a lot! Kind regards, Xu

在 2017年9月5日,21:00,zhaoyanswill <notifications@github.com mailto:notifications@github.com<mailto:notifications@github.com mailto:notifications@github.com>> 写道:

Sorry for the late reply!

I’m looking into the problem. Could you try to use home-brew to install it? Thanks!

On Sep 1, 2017, at 4:25 AM, xiaoxu9907 <notifications@github.com mailto:notifications@github.com<mailto:notifications@github.com mailto:notifications@github.com>> wrote:

I want to install RAPSearch in my mac pro. And thanks to the discussion forum, I installed the gcc49 and boost in my computer in advance. but I still got a error and fail to install it. Could you please give me some help? Following information is my result:

RAPSearch installer rm -f *.o rapsearch prerapsearch g++ -c -O3 -w HashSearch.cpp -o HashSearch.o -I ./ g++ -c -O3 -w BlastStat.cpp -o BlastStat.o -I ./ g++ -c -O3 -w Seg.cpp -o Seg.o -I ./ g++ -c -O3 -w mergeUnit.cpp -o mergeUnit.o -I ./ g++ -O3 -w -o rapsearch main.cpp HashSearch.o BlastStat.o Seg.o mergeUnit.o -I ./ -L ./ -lboost_serialization -lpthread -lboost_thread -lboost_system -lboost_chrono error: unable to open output file 'Src/main-cb7e04.o': 'No such file or directory' 1 error generated. make: *** [rapsearch] Error 1 A local bin directory already exists, do you wish to overwrite? (Y/N)Y mv: rename Src/rapsearch to bin/rapsearch: No such file or directory mv: rename Src/prerapsearch to bin/prerapsearch: No such file or directory

Executables are now installed under bin/

I really appreciate your help. Kind regards Xu Xiao

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <https://github.com/zhaoyanswill/RAPSearch2/issues/36 https://github.com/zhaoyanswill/RAPSearch2/issues/36>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AETkp0R_eKuP91FAcroqjlAhGgj6QzTjks5sd79jgaJpZM4PJ2aq https://github.com/notifications/unsubscribe-auth/AETkp0R_eKuP91FAcroqjlAhGgj6QzTjks5sd79jgaJpZM4PJ2aq>.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<https://github.com/zhaoyanswill/RAPSearch2/issues/36#issuecomment-327167726 https://github.com/zhaoyanswill/RAPSearch2/issues/36#issuecomment-327167726>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AXeyjKzzr0XF1UA12MX1hCG85N1c_scyks5sfUXggaJpZM4PJ2aq https://github.com/notifications/unsubscribe-auth/AXeyjKzzr0XF1UA12MX1hCG85N1c_scyks5sfUXggaJpZM4PJ2aq>. — You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/zhaoyanswill/RAPSearch2/issues/36#issuecomment-327180600, or mute the thread https://github.com/notifications/unsubscribe-auth/AETkpzppUapFq0uw9tknchtuNswQv1Sjks5sfVEpgaJpZM4PJ2aq.

bberger14 commented 6 years ago

Any updates on installing with 10.2 or later on MacOS?

metageni commented 6 years ago

@bberger14

install brew, and then brew install brewsci/science/rapsearch2

thh32 commented 5 years ago

I have tried both brew and installing via the GitHub download without success, is the github version likely to be fixed for installation anytime soon?