Open moorembioinfo opened 10 months ago
With phylo.py, the core genome output doesn't match expectations. Assuming I'm correct in thinking that the .matrix is the right output.
With my alignment and a threshold of 0.95, 4,800,000/5,000,000 sites should be retained. Instead, 4,781,411 are output.
With phylo.py, the core genome output doesn't match expectations. Assuming I'm correct in thinking that the.matrix is the right output.
With my alignment and a threshold of 0.95, 4,800,000/5,000,000 sites should be retained. Instead, 4,781,411 are output.