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zhenchengfang / PPR-Meta

A tool for identifying phages and plasmids from metagenomic fragments using deep learning
GNU Lesser General Public License v3.0
42 stars 9 forks source link

Bioconda recipe #8

Open hoelzer opened 4 years ago

hoelzer commented 4 years ago

Hi,

do you consider building a bioconda recipe for PPR-Meta? This would be very helpful to get the tool running more easily.

zhenchengfang commented 4 years ago

Sorry for the late reply. I will consider how to make PPR-Meta more user friendly. However, I am busying in another work so it may take a while for the update. Thank you for your suggestion.

hoelzer commented 3 years ago

Hi, I just wanted to push this again and ask if a bioconda installation for PPR-Meta is something that might still come? :) Thanks!

zhenchengfang commented 3 years ago

Hi, we have just built a docker (beta version) of PPR-Meta, please refer to the file "PPR-Meta manual (include the docker version, draft).pdf". If there is any question, please contact me.

hoelzer commented 2 years ago

Hey, having the Docker is nice but I still wonder if there is any hope for a conda package? :) That would be very useful bc/ we support both conda and Docker in a pipeline and currently the conda profile does not work bc/ PPRMeta does not support it.

Thanks!

simakro commented 10 months ago

I second the suggestion/request by hoelzer: an option to install through bioconda would be very useful, particularly for pipeline integration.