outputs need to be generated even error ocuured in optimization

[zhenglei-gao]

• Produce an error log file
• Produce .kgo and .kgg when there is an error
• Produce comments in the .kgo file indicate error occured and the possible reason
  • Model Structure Unsuitable.
  • Some Parameters Values on the boundary.
  • More reasonable initial values.

[zhenglei-gao]

  HStestcases09050119 <- mkinmod.full(
       conc = list(
                   sink  = TRUE,
       type = "HS",
         k1 = list(ini   = 0.6000,
                   fixed = 0,
                   lower = 0.0,
                   upper = Inf),
         k2 = list(ini   = 0.15000,
                   fixed = 0,
                   lower = 0.0,
                   upper = Inf),
         tb = list(ini   = 0.10000,
                   fixed = 0,
                   lower = 0.0,
                   upper = Inf),
         M0 = list(ini   = 100,
                   fixed = 0,
                   lower = 0.0,
                   upper = Inf)),data=HStestcases2.txt)
      Fit    <- KinEval(
              HStestcases09050119,
              evalMethod = 'IRLS',
             optimMethod = 'LM',
               plotfit   = TRUE,
               quiet     = TRUE,
               ctr       = kingui.control(
                              maxIter = 100,
                            tolerance = 1E-06,
                            odesolver = 'lsoda'),
            irls.control = list(
                              maxIter = 10,
                            tolerance = 0.001))

    list2ascii(summary(Fit, cov = TRUE,version = versioninfo[1,1]),"out.kgo")

[zhenglei-gao]

I should have a function to generate .kgo and .kgg from just the mkinmod.full object

[zhenglei-gao]

1. fiterr <- function(obj){}
2. Think about the error message!!
3. ...

[zhenglei-gao]

Need to identify which parameters are 0 and could be the reason that the statistics are not calculated.

[zhenglei-gao]

http://rss.acs.unt.edu/Rdoc/library/R.oo/html/Exception.html

http://stackoverflow.com/questions/11666086/output-error-warning-log-txt-file-when-running-r-script-under-command-line?lq=1

http://stackoverflow.com/questions/1109017/how-do-you-print-to-stderr-in-r?lq=1

https://stat.ethz.ch/pipermail/r-help/2005-May/070750.html

[zhenglei-gao]

[zhenglei-gao]

[zhenglei-gao]

Add emptyreport, emptygraph, print.emptyReport to generate complete empty report file and graph data file for the GUI.

[zhenglei-gao]

1. KinReport added
2. Use logerror and loginfo with logging package