zhengrongbin
commented
2 years ago Hi Liping,
Thank you for reaching out. The error probably from the xlmhg package which we used as our statistical testing for pathway analysis. However, “ mhg_cython” is a codependency with xlmhg package, and it is seems currently supported at python 3.8 but not 3.9. Could you try to downgrade your python and re-install MEBOCOST. At least in my testing, the error disappeared at python 3.8. We use xlmhg package only in pathway analysis and don’t influence communication prediction, so the object you saved from communication prediction can still be loaded after MEBOCOST re-installed. Please let me if it works or not. Thanks!
Best, Rongbin
On Jun 3, 2022, at 8:26 AM, LipingChen0607 @.***> wrote:
Dear Dr Zheng, Thanks a lot for sharing your amazing work about MEBOCOST! However, when I run the module "Inference of pathway to the communications", there are some error like this in attachment. Could you give me some advice to deal with this problem? Thank you!
https://user-images.githubusercontent.com/74603389/171852350-b019e144-7af5-4438-a3ca-ab687ee6a725.png https://user-images.githubusercontent.com/74603389/171852367-91e0e30a-8e26-4ef2-ad07-ef26b53a387b.png https://user-images.githubusercontent.com/74603389/171852382-5ae5b693-3ae5-4fe7-a37c-ddcc1fff82ed.png https://user-images.githubusercontent.com/74603389/171852392-bcdf1d1b-ba11-45b1-a990-f6fc7715fec0.png https://user-images.githubusercontent.com/74603389/171852398-1c29148b-1224-42df-93bf-f2fa82075286.png https://user-images.githubusercontent.com/74603389/171852658-734087a5-8189-46a8-a5b6-2b32e1f516e2.png — Reply to this email directly, view it on GitHub https://github.com/zhengrongbin/MEBOCOST/issues/2, or unsubscribe https://github.com/notifications/unsubscribe-auth/AD76SHKLDCCKATLUVTCUHV3VNH2VXANCNFSM5XYQX6LQ. You are receiving this because you are subscribed to this thread.
LipingChen0607
Dear Dr Zheng, Thanks a lot for sharing your amazing work about MEBOCOST! However, when I run the module "Inference of pathway to the communications", there are some error like this in attachment. Could you give me some advice to deal with this problem? Thank you!