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zhengrongbin / MEBOCOST

A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
BSD 3-Clause "New" or "Revised" License
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Can enzyme genes contributing to the inferred metabolite be extracted? #22

Closed YaoyJiang closed 5 months ago

YaoyJiang commented 6 months ago

Hi Rongbin,

Thank you for providing such a useful tool. I've tested Mebocost on my personal scRNA-seq dataset, and it worked beautifully. I’m wondering whether the enzyme genes that contribute to the inferred metabolite could be extracted?

Thanks, Yao Jiang

zhengrongbin commented 6 months ago

Yes, the metabolite and enzyme relationships can be found at mebo_obj.met_enzyme. We right now don't have specific function to extract the enzymes based on metabolite names, but everything is in the met_enzyme data frame. Best Regards!Rongbin ZhengOn May 18, 2024, at 3:39 PM, YaoyJiang @.***> wrote: Hi Rongbin, Thank you for providing such a useful tool. I've tested Mebocost on my personal scRNA-seq dataset, and it worked beautifully. I’m wondering whether the enzyme genes that contribute to the inferred metabolite could be extracted? Thanks, Yao Jiang

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