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zhengrongbin / MEBOCOST

A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
BSD 3-Clause "New" or "Revised" License
66 stars 10 forks source link

met_ann = None, but used in infflux and efflux (vignette) #24

Closed NeuralBind closed 5 months ago

NeuralBind commented 5 months ago

Hello,

First thanks for this nice tool!

In the vignettes, both efflux and infflux use in the met_ann which is none in the whole script. How can i access this ?

efflux_mat = pd.merge(efflux_mat, met_ann[['Secondary_HMDB_ID', 'metabolite']]

zhengrongbin commented 5 months ago

Hi this should be fixed in the version 1.0.4 at https://github.com/kaifuchenlab/MEBOCOSTPlease try it and let me know if you still have question. Thanks!Best Regards!Rongbin ZhengOn Jun 18, 2024, at 7:53 AM, NeuralBind @.***> wrote: Hello, First thanks for this nice tool! In the vignettes, both efflux and infflux use in the met_ann which is none in the whole script. How can i access this ? efflux_mat = pd.merge(efflux_mat, met_ann[['Secondary_HMDB_ID', 'metabolite']]

—Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you are subscribed to this thread.Message ID: @.***>

NeuralBind commented 5 months ago

oh, just saw there was another repository. Thanks! I will try it out.