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zhengxwen / HIBAG

R package – HLA Genotype Imputation with Attribute Bagging (development version only)
https://hibag.s3.amazonaws.com/index.html
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HLA typing for SNP2HLA output #20

Open xiw588 opened 1 year ago

xiw588 commented 1 year ago

Hi, I wonder if I could feed the bed, bim and fam files output from SNP2HLA into HIBAG to get the HLA class I and II typing.

Thank you in advance!

zhengxwen commented 1 year ago

Not sure what the output of SNP2HLA is. You can use the raw SNP genotypes as the input of HIBAG.