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zhengxwen / HIBAG

R package – HLA Genotype Imputation with Attribute Bagging (development version only)
https://hibag.s3.amazonaws.com/index.html
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Amino Acid test with continuous outcome #4

Open wusixer opened 6 years ago

wusixer commented 6 years ago

I'm trying to use HIBAG with continuous outcome to do allelic test and amino acid test, my allelic test ran really fast and has no issue. However, when running the amino acid test, it asked me to convert my outcome to factor, the association for amino acid test ran really slow and didn't output any result. I was wondering if it is capable for continuous phenotype.

In theory the "glm" model is supposed to handle this, but the documentation of HIBAG somehow makes me think it's not designed for AA test with continuous outcome.

Please let me know if I'm understanding it right.

zhengxwen commented 6 years ago

I have not implemented such function (AA test with continuous outcomes) yet. This feature requirement is added to my to-do list now.

wusixer commented 6 years ago

Thank you! Do you have an idea when in the future it will be implemented?