the definition of missing rate

zhengxwen / SNPRelate

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)

http://www.bioconductor.org/packages/SNPRelate

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Closed nottwy closed 6 years ago

nottwy commented 6 years ago

Sorry to disturb you again.

Could you please explain the meaning of missing.rate? What does it mean?

zhengxwen commented 6 years ago

missing.rate is the proportion of missing genotypes.

nottwy commented 6 years ago

missing.rate = M/N where M is the number of samples whose genotype misses here and N is the total number of samples. Is it correct?

zhengxwen commented 6 years ago

yes