search

zhengxwen / SNPRelate

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
http://www.bioconductor.org/packages/SNPRelate
101 stars 25 forks source link

An option to create an integer snp.id when converting from PLINK #6

Closed zhengxwen closed 10 years ago

zhengxwen commented 10 years ago

The enhancement in snpgdsBED2GDS.

zhengxwen commented 10 years ago

In SNPRelate_0.99.2, an option cvt.snpid:

snpgdsBED2GDS(bed.fn, fam.fn, bim.fn, out.gdsfn, family=FALSE,
    compress.annotation="ZIP.max", option=NULL, cvt.snpid=c("auto", "int"),
    verbose=TRUE)