SNPRelate cannot find variant.id from SeqArray object

zhengxwen / SNPRelate

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)

http://www.bioconductor.org/packages/SNPRelate

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SNPRelate cannot find variant.id from SeqArray object #76

Open yanglipmed opened 3 years ago

yanglipmed commented 3 years ago

In SeqArray object, this is variant.id. When SNPRelate::snpgdsSummary( ) opens SeqArray object, it gives error: Error in index.gdsn(gds, "snp.id") : No such GDS node "snp.id"!.

How to link snp.id to variant.id in SNPRelate?

zhengxwen commented 3 years ago

Please use seqSummary() in the SeqArray package instead.

yanglipmed commented 3 years ago

Thanks.