SNPRelate for parasite genome analysis

zhengxwen / SNPRelate

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)

http://www.bioconductor.org/packages/SNPRelate

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Open vappiah opened 3 years ago

vappiah commented 3 years ago

In the example given in your document, the data used was a human genome. Can SNPRelate be used to analysis Plasmodium falciparum snp data as well?

zhengxwen commented 3 years ago

Yes, if Plasmodium falciparum genomes are in the diploid state.