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zhengxwen / SeqArray

Data management of large-scale whole-genome sequence variant calls (Development version only)
http://www.bioconductor.org/packages/SeqArray
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seqGDS2VCF does not generate a bgzip vcf file #28

Closed trb8 closed 6 years ago

trb8 commented 6 years ago

seqGDS2VCF(gds, "output.vcf.gz") generates a gzipped vcf but not bgzip-ed vcf. So tabix indexing fails.

zhengxwen commented 6 years ago

I have resolved this problem in the latest version. See: http://bioconductor.org/packages/devel/bioc/news/SeqArray/NEWS Please install the latest version from GitHup.