Closed thierrygosselin closed 5 years ago
Show me sessionInfo()
please.
Yes sorry about that
R version 3.5.2 (2018-12-20)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.3
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.5.2 tools_3.5.2 yaml_2.2.0
after library(SeqArray
R version 3.5.2 (2018-12-20)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.3
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] SeqArray_1.22.3 gdsfmt_1.18.1
loaded via a namespace (and not attached):
[1] IRanges_2.16.0 Biostrings_2.50.2 bitops_1.0-6 GenomeInfoDb_1.18.2 stats4_3.5.2
[6] zlibbioc_1.28.0 XVector_0.22.0 S4Vectors_0.20.1 tools_3.5.2 RCurl_1.95-4.11
[11] yaml_2.2.0 parallel_3.5.2 compiler_3.5.2 BiocGenerics_0.28.0 GenomicRanges_1.34.0
[16] GenomeInfoDbData_1.2.0
I've tested outside RStudio GUI more details is given:
*** caught segfault ***
address 0x30300000110, cause 'memory not mapped'
Traceback:
1: SeqArray::seqSetFilter(object = data, action = "pop", verbose = TRUE)
2: FUN(X[[i]], ...)
3: lapply(strata, mis, data)
Hi Xiuwen, Are you able to reproduce the error I get with your Linux ? Thierry
Please update the SeqArray package immediately from GitHub.
Works! thank you for the quick fix.
I am getting a similar error using 1.36.3
-- what version was this fix applied to?
Show sessionInfo()
please.
^^ thank you for the reply on a closed issue -- i appreciate that.
I was getting a very similar error, but the problem was my own mistake, not the software.
Hi Xiuwen,
Is it me doing it wrong or it's a bug in SeqArray:
The idea is to get the missing data from a stratified dataset.
The data and strata sent by email to reproduce the bug:
Crashes R Sometimes it run fine Any idea ?
Best Thierry