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zhengxwen / SeqArray

Data management of large-scale whole-genome sequence variant calls (Development version only)
http://www.bioconductor.org/packages/SeqArray
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error: could not find function "seqVCF2GDS" #55

Closed lakishadavid closed 4 years ago

lakishadavid commented 4 years ago

I'm running R version 3.6.1. I installed SeqArray through bioconductor. When I try to use seqVCF2GDS, I get the error message that the function could not be found.

vcffile <- system.file("Samples.vcf.gz")

gdsfile <- tempfile()

seqVCF2GDS(vcffile, gdsfile)

Error in seqVCF2GDS(vcffile, gdsfile) : 
  could not find function "seqVCF2GDS"
lakishadavid commented 4 years ago

I found the issue. I needed to install the package gdsfmt separately.