Closed thierrygosselin closed 4 years ago
I'm trying to import a plink bed file:
test1 <- SeqArray::seqBED2GDS( bed.fn = "plink.bed", fam.fn = "plink.bim", bim.fn = "plink.fam", out.gdsfn = "test1.gds", compress.geno = "ZIP_RA", compress.annotation = "ZIP_RA", verbose = TRUE ) %>% SeqArray::seqOpen(gds.fn = ., readonly = FALSE)
And when I look at the GDS, the number of variant and sample show that their is a switch between the 2. Is it something I'm doing wrong here ?
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Sorry my mistake, I switched the bim and fam files ...
I'm trying to import a plink bed file:
And when I look at the GDS, the number of variant and sample show that their is a switch between the 2. Is it something I'm doing wrong here ?
Files were sent to your email.