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zhengxwen / SeqArray

Data management of large-scale whole-genome sequence variant calls (Development version only)
http://www.bioconductor.org/packages/SeqArray
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SeqAlleleCount issue with unused argument (.progress = TRUE) #83

Closed leoneago closed 1 year ago

leoneago commented 1 year ago

Hi @zhengxwen After trying to use radiator to filter my RADseq data, I got this error message from SeqArray:

Error in SeqArray::seqAlleleCount(gdsfile = gds, ref.allele = NULL, .progress = TRUE, : unused argument (.progress = TRUE)

How can I solve this? Thanks in advance, AL

zhengxwen commented 1 year ago 
     seqAlleleCount(gdsfile, ref.allele=0L, minor=FALSE, parallel=seqGetParallel(),
         verbose=FALSE)

.progress = TRUE should be replaced by verbose=TRUE.