zhouhufeng
commented
1 year ago I have just successfully installed the package through
manually intall the package.
Thanks very much, the problem resolved.
Closed zhouhufeng closed 1 year ago
zhouhufeng
commented
1 year ago I have just successfully installed the package through
manually intall the package.
Thanks very much, the problem resolved.
Besides the default installation methods, is there any other way walk around it?
library("devtools") install_github("zhengxwen/gds2bgen")
does not work on my clster.
I have encountered consistent issues with the installation. As follows
[50/53] Linking build/3rd_party/zstd-1.1.0/libzstd.a ../src/View.cpp: In member function ‘void genfile::bgen::View::setup(const string&)’: ../src/View.cpp:212:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( m_stream->gcount() != m_postheader_data.size() ) { ^ At global scope: cc1plus: warning: unrecognized command line option "-Wno-c++11-long-long" [enabled by default]
[51/53] Linking build/3rd_party/sqlite3/libsqlite3.a [52/53] Linking build/db/libdb.a [53/53] Linking build/libbgen.a Waf: Leaving directory `/tmp/RtmpEbogUY/R.INSTALL2b5b6584099d8/gds2bgen/src/bgen_v1.1.8/build' 'build' finished successfully (35.483s) cp -f bgen_v1.1.8/build/libbgen.a . cp -f bgen_v1.1.8/build/3rd_party/zstd-1.1.0/libzstd.a . rm -rf bgen_v1.1.8/build g++ -std=gnu++11 -shared -L/n/helmod/apps/centos7/Core/R_core/4.0.2-fasrc01/lib64/R/lib -L/usr/local/lib64 -o gds2bgen.so R_gds2bgen.o gds2bgen.o libbgen.a libzstd.a -L/n/helmod/apps/centos7/Core/R_core/4.0.2-fasrc01/lib64/R/lib -lR installing to /n/user/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-gds2bgen/00new/gds2bgen/libs R inst ** byte-compile and prepare package for lazy loading Error: (converted from warning) package ‘gdsfmt’ was built under R version 4.0.5 Execution halted ERROR: lazy loading failed for package ‘gds2bgen’