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zhengxwen / gdsfmt

R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)
http://www.bioconductor.org/packages/gdsfmt
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A bug in add.gdsn (gdsfmt_1.1.0) #1

Closed zhengxwen closed 10 years ago

zhengxwen commented 10 years ago

We observe that adding a very large dataset by add.gdsn could cause the following error:

Error in add.gdsn(gfile, "snp.id", snp.id, compress = compress.annotation,  : 
  Invalid Zip Deflate Stream operation 'Seek'!

Immediate solution -- downgrade the package gdsfmt from v1.1.0 to v1.0.4:

install.packages("gdsfmt", repos="http://bioconductor.org/packages/release/extra")

Patched version: v1.1.1.

zhengxwen commented 10 years ago

Fix it in gdsfmt_1.1.1.1