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zhenqi-he / transnuseg

MICCAI2023 - TransNuSeg: A Lightweight Multi-Task Transformer for Nuclei Segmentation
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data processing #1

Open Xujingkk opened 1 year ago

Xujingkk commented 1 year ago

Hi, can you share about the data preprocessing, as an example of monuseg, how to get the labels in png form from the original xml file?

zhenqi-he commented 1 year ago

Hi, the dataset is comprised of a public MoNuSeg Dataset and a private dataset, which was released in the previous work [1], please refer to the downloading link (BaiDu cloud / Google Drive) in the associated repo [2] / the link provided in readme of this repo

[1]Jing Ke, Yizhou Lu, Yiqing Shen, Junchao Zhu, Yijin Zhou, Jinghan Huang, Jieteng Yao, Xiaoyao Liang, Yi Guo, Zhonghua Wei, Sheng Liu, Qin Huang, Fusong Jiang, and Dinggang Shen. Clusterseg: A crowd cluster pinpointed nucleus segmentation framework with cross-modality datasets. Medical Image Analysis, page102758, 2023. [2] https://github.com/lu-yizhou/ClusterSeg