Error during sbayesrc - c++ exception (unknown reason)

zhilizheng / SBayesRC

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Error during sbayesrc - c++ exception (unknown reason) #35

Closed lkjgoose closed 2 months ago

lkjgoose commented 2 months ago

Hello, I came across this error during sbayesrc and i cannot find any reason. I runned Rscript -e "SBayesRC::sbayesrc(mafile='$ma_file', LDdir='$ld_folder', \ outPrefix='$out_prefix', annot='$annot', log2file=TRUE)" Can I get any ideas why it happened? thank you. sbayes_error

zhilizheng commented 2 months ago

Hi @lkjgoose ,

Thanks for the feedback.

You need run all the steps in the tutorial. The SNP set may be inconsistent between the LD and the summary stats. So, the steps for the clean and impute will be necessary in this case.

Regards, Zhili