search

zhiyhu / masonmd

R package to predict mutations whether can elicit nonsense-mediated decay or not
MIT License
8 stars 4 forks source link

duplication #2

Open aRanghiero opened 2 years ago

aRanghiero commented 2 years ago

Hi, can this package see the effect of a duplication in the chek2 gene of about 1500 nt? thank you

zhiyhu commented 2 years ago

Hi, in theory this package can if you meant an insertion of duplicated sequences. Perhaps try set the parameter "mut_nt" to the 1500nt insertion sequence.