Hi, and thanks for your availability!
I still have problems with the attachContext function, despite the update of the mutSignatures package.
Do you have any advice on what can be used to make the function work?
Is there a way around the problem?
Thank you
Alberto
PS: I upload the session of R
R version 4.2.2 Patched (2022-11-10 r83330)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.5 LTS
Hi, and thanks for your availability! I still have problems with the attachContext function, despite the update of the mutSignatures package. Do you have any advice on what can be used to make the function work? Is there a way around the problem? Thank you Alberto PS: I upload the session of R
R version 4.2.2 Patched (2022-11-10 r83330) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 20.04.5 LTS
Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale: [1] LC_CTYPE=it_IT.UTF-8 LC_NUMERIC=C LC_TIME=it_IT.UTF-8 LC_COLLATE=it_IT.UTF-8 LC_MONETARY=it_IT.UTF-8
[6] LC_MESSAGES=it_IT.UTF-8 LC_PAPER=it_IT.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=it_IT.UTF-8 LC_IDENTIFICATION=C
attached base packages: [1] stats4 stats graphics grDevices utils datasets methods base
other attached packages: [1] devtools_2.4.5 usethis_2.1.6 mutSignatures_2.1.5 foreach_1.5.2
[5] BSgenome.Hsapiens.UCSC.hg19_1.4.3 gridExtra_2.3 ggplot2_3.4.0 kableExtra_1.3.4
[9] reshape2_1.4.4 dplyr_1.1.0 vcfR_1.13.0 BSgenome_1.66.2
[13] rtracklayer_1.58.0 Biostrings_2.66.0 XVector_0.38.0 GenomicRanges_1.50.2
[17] GenomeInfoDb_1.34.9 IRanges_2.32.0 S4Vectors_0.36.1 BiocGenerics_0.44.0
loaded via a namespace (and not attached): [1] colorspace_2.1-0 rjson_0.2.21 ellipsis_0.3.2 rprojroot_2.0.3 fs_1.6.1
[6] rstudioapi_0.14 proxy_0.4-27 remotes_2.4.2 fansi_1.0.4 xml2_1.3.3
[11] codetools_0.2-19 splines_4.2.2 doParallel_1.0.17 cachem_1.0.6 knitr_1.42
[16] pkgload_1.3.2 Rsamtools_2.14.0 cluster_2.1.4 shiny_1.7.4 BiocManager_1.30.19
[21] compiler_4.2.2 httr_1.4.4 Matrix_1.5-3 fastmap_1.1.0 cli_3.6.0
[26] later_1.3.0 htmltools_0.5.4 prettyunits_1.1.1 tools_4.2.2 gtable_0.3.1
[31] glue_1.6.2 GenomeInfoDbData_1.2.9 Rcpp_1.0.10 Biobase_2.58.0 vctrs_0.5.2
[36] ape_5.6-2 svglite_2.1.1 nlme_3.1-162 iterators_1.0.14 pinfsc50_1.2.0
[41] xfun_0.37 stringr_1.5.0 ps_1.7.2 rvest_1.0.3 mime_0.12
[46] miniUI_0.1.1.1 lifecycle_1.0.3 restfulr_0.0.15 XML_3.99-0.13 zlibbioc_1.44.0
[51] MASS_7.3-58.2 scales_1.2.1 promises_1.2.0.1 MatrixGenerics_1.10.0 parallel_4.2.2
[56] SummarizedExperiment_1.28.0 curl_5.0.0 yaml_2.3.7 memoise_2.0.1 stringi_1.7.12
[61] desc_1.4.2 BiocIO_1.8.0 permute_0.9-7 pkgbuild_1.4.0 BiocParallel_1.32.5
[66] rlang_1.0.6 pkgconfig_2.0.3 systemfonts_1.0.4 matrixStats_0.63.0 bitops_1.0-7
[71] pracma_2.4.2 evaluate_0.20 lattice_0.20-45 purrr_1.0.1 GenomicAlignments_1.34.0
[76] htmlwidgets_1.6.1 tidyselect_1.2.0 processx_3.8.0 plyr_1.8.8 magrittr_2.0.3
[81] R6_2.5.1 generics_0.1.3 profvis_0.3.7 DelayedArray_0.24.0 pillar_1.8.1
[86] withr_2.5.0 mgcv_1.8-41 RCurl_1.98-1.10 tibble_3.1.8 crayon_1.5.2
[91] utf8_1.2.3 urlchecker_1.0.1 rmarkdown_2.20 grid_4.2.2 callr_3.7.3
[96] vegan_2.6-4 digest_0.6.31 webshot_0.5.4 xtable_1.8-4 httpuv_1.6.8
[101] munsell_0.5.0 viridisLite_0.4.1 sessioninfo_1.2.2