Open timpeters82 opened 7 years ago
Hi Tim, Maybe you could use -c to get coverage (and recover from that the methylated and unmethylated reads). That coverage is the sum of methylated and unmethylated reads (the effective cytosine coverage). Usually I just use coverage and beta. I will keep in mind and make that optionally available in the next commits.
Thanks,
Wanding
Thanks Wanding, that should be sufficient. Cheers, Tim
Hi Wanding, Nice work on biscuit. Is there an option for vcf2bed to call methylated and unmethylated reads instead of just the ratio? Or do I have to parse the vcf itself for this? Cheers, Tim