limit number samples biscuit - Githubissues

zhou-lab / biscuit

BISulfite-seq CUI Toolkit

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limit number samples biscuit #15

Open jleluyer opened 7 years ago

jleluyer commented 7 years ago

Hello,

I have a recurrent problem calling SNPs for bisulfite data. I followed the readme for my 40 samples:

Align with biscuit align
sort and index with samtools
SNP calling with biscuit pileup. Yet, I always end up with an error than my index are missing if I keep all my 40 samples. When I keep only 30 of them (whatever the samples), the command works fine.

Is there a limit of number of samples that Biscuit can take ?

Thanks

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