I have a recurrent problem calling SNPs for bisulfite data. I followed the readme for my 40 samples:
Align with biscuit align
sort and index with samtools
SNP calling with biscuit pileup.
Yet, I always end up with an error than my index are missing if I keep all my 40 samples. When I keep only 30 of them (whatever the samples), the command works fine.
Is there a limit of number of samples that Biscuit can take ?
Hello,
I have a recurrent problem calling SNPs for bisulfite data. I followed the readme for my 40 samples:
Is there a limit of number of samples that Biscuit can take ?
Thanks
Best