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zhou-lab / biscuit

BISulfite-seq CUI Toolkit
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How can I cite biscuit as a reference in my paper? #19

Open lijinbella opened 7 years ago

lijinbella commented 7 years ago

Sorry I didn't find Biscuit paper in Pubmed and please tell me which paper to cite. Thanks!

zwdzwd commented 7 years ago

Unfortunately, it's currently still unpublished...

lijinbella commented 7 years ago

Sad. When will it be published in your prediction? or...Can I just put the website https://github.com/zwdzwd/biscuit in the paper?

zwdzwd commented 7 years ago

That would probably be the best way right now. We are pushing it now. but it's hard to predict when it comes to publication :-(

tantrev commented 7 years ago

On that note, is Biscuit a "three-base" or "four-base" aligner? I only ask because I've noticed bwa-meth, a three-base aligner, seems to be ~3x faster than Biscuit.

chrisamiller commented 7 years ago

Have you considered posting a preprint to bioRxiv, which would allow you to accumulate citations and credit in the meantime? http://biorxiv.org/

lijinbella commented 6 years ago

Hello again!

Thank you for replying me the question before. And I want to ask you another question in Biscuit usage.

When I use Biscuit asm to call allele specific methylation, it shows :

~/biscuit asm outepiread_sort > outasm biscuit: src/asm_pairwise.c:122: main_asm: Assertion `strlen(in->fields[4]) == 1' failed. Aborted (core dumped)

I want to know if I make mistakes before? Because it works well always before this step.

Thank you very much!

Best wishes!

Jin Li

2017-09-20

lijinbella

发件人：Wanding Zhou - Bioinformatics notifications@github.com 发送时间：2017-05-16 08:48 主题：Re: [zwdzwd/biscuit] How can I cite biscuit as a reference in my paper? (#19) 收件人："zwdzwd/biscuit"biscuit@noreply.github.com 抄送："lijinbella"lijinbella@163.com,"Author"author@noreply.github.com

That would probably be the best way right now. We are pushing it now. but it's hard to predict when it comes to publication :-( — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.