Open smcnew opened 5 years ago
Hi I think the last three columns represent the allele support, total read depth, and allele frequency. There is currently not an option to add bed headers. But I will add it to my list.
Best,
Thanks so much!
Sabrina
On Tue, Dec 18, 2018 at 3:40 PM Wanding Zhou - Bioinformatics < notifications@github.com> wrote:
Hi I think the last three columns represent the allele support, total read depth, and allele frequency. There is currently not an option to add bed headers. But I will add it to my list.
Best,
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Hi: I'm wondering where to find information on what the columns are produced by the vcf2bed -t snp file. I got an output file that has the following columns:
100056 34 35 A G 1/1 G3 3 1.00
I'm guessing the first series is chromosome, start position, stop position, major allele, minor allele, genotype; however I can't figure out what the last three ("G3", "3", "1.00") values refer to. Any help is greatly appreciated.
More generally- if there's an option to add headers to the gc, snp, and other .bed files I'd appreciate knowing how.
Thanks!