I have fastq files with read group IDs in the header. Those end up in the mapped SAM file. I wanted to know if biscuit markdup is aware of different read groups when marking duplicates or if I have to split the reads by read group. I think Picard is readgroup-aware.
I have fastq files with read group IDs in the header. Those end up in the mapped SAM file. I wanted to know if biscuit markdup is aware of different read groups when marking duplicates or if I have to split the reads by read group. I think Picard is readgroup-aware.