I am trying to run linda on my data, i have an otu table (called genus) with counts in the cells, taxa as the rownames and sampleIDs as the the column names. I also have a metadata dataframe with sampleIDs as the rownames. When I try to run linda I get this error:
linda(genus, metadata, formula = '~Pathology*Antibiotics')
Error in validObject(.Object) :
invalid class “sample_data” object: Sample Data must have non-zero dimensions.
I am trying to run linda on my data, i have an otu table (called genus) with counts in the cells, taxa as the rownames and sampleIDs as the the column names. I also have a metadata dataframe with sampleIDs as the rownames. When I try to run linda I get this error: