Master table for mammalian datasets

zhoulab / p53-chip-seq-data

Basic machine learning on genomic data

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Master table for mammalian datasets #25

Open varsh1090 opened 6 years ago

varsh1090 commented 6 years ago

Requirements - peaks .bed files Genome files for Homer to get fasta - human hg18 or 19 and mouse mm9 Annotation - .anno files Calculate peak length and repeat proportion. No sample count since the samples are from different genomes. Add a column for treatment type (NT = no treatment, T = treatment) and cell type.

victorlin commented 6 years ago

Are these files already on HPG? If so, can you provide the filepaths/directories?