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zhoux85 / STAligner

STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
MIT License
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Handling of Alzheimer's Samples #20

Open wang-youzi opened 4 months ago

wang-youzi commented 4 months ago

Thank you very much for your excellent work mentioned in the paper. You mentioned processing samples of Alzheimer's disease and normal ones, which I am very interested in. I would like to know the preprocess of the dataset. I am very interested in this and hope to perform similar processing on this dataset and further analyze it in my project. I would be grateful if you could share the relevant code or provide some guidance.

Thank you for your time and effort!

czwdcm commented 2 months ago

Hello, I have the same issue. I wonder if you have resolved it. Additionally, I would like to ask if you know which files to download from the dataset link provided in the article. Could you share that with me? Thank you very much！

yyq2215986391 commented 2 months ago

Hello, I have the same issue. I wonder if you have resolved it. Additionally, I would like to ask if you know which files to download from the dataset link provided in the article. Could you share that with me? Thank you very much！

Hello, do you have access to the relevant dataset now? Can you share how to download the relevant dataset and the steps to preprocess the data?

zhoux85 commented 3 weeks ago

Hi. Thanks for your interest in STAligner. The preprocessing pipeline and dataset link are in the jupyter file. Hope it helps!

https://drive.google.com/drive/folders/1CRbfZEyCqh6Ur1iHsASc1WKy44za_t9k?usp=drive_link