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zhpn1024 / ribotish

Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
http://dx.doi.org/10.1038/s41467-017-01981-8
GNU General Public License v3.0
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what the types of TisType mean? #15

Closed shwdmsh closed 3 years ago

shwdmsh commented 3 years ago

What the types of TisType mean?When I use the ribotish predict ,I get the many types of TisType,what dose every TisType means ? TisType

Annotated Truncated Novel Internal:CDSFrameOverlap Internal 3'UTR 5'UTR 5'UTR:CDSFrameOverlap Extended 3'UTR:Known 3'UTR:CDSFrameOverlap Novel:CDSFrameOverlap Truncated:Known

zhpn1024 commented 3 years ago
TisType: Relative position of this TIS to annotated ORF of the transcript. 'Novel' if no ORF annotation. ':Known' means the TIS is annotated in another transcript. ':CDSOverlap' means the ORF overlaps with annotated CDS in another transcript in the same reading frame.
shwdmsh commented 3 years ago

Thanks