zhpn1024 / ribotish

Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
http://dx.doi.org/10.1038/s41467-017-01981-8
GNU General Public License v3.0
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ribotish quality: error: argument -d: expected one argument #18

Open yycunc opened 3 years ago

yycunc commented 3 years ago

Hi, when I wanted to use option -d to define the position range near start codon or stop codon, I met such an error:

ribotish quality: error: argument -d: expected one argument

My command line is:

ribotish quality -b D0_1.unique_mapped.sorted.bam -g Mus_musculus.GRCm39.103.chr.gtf -d -20,60

Would you please show me how to customize the position range?

Thanks a lot!

zhpn1024 commented 3 years ago

The minus - sign causes python to treat it as a new option. See the following link for solution https://github.com/zhpn1024/ribotish/issues/14#issuecomment-801547509

zhpn1024 commented 3 years ago

14