zhpn1024 / ribotish

Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
http://dx.doi.org/10.1038/s41467-017-01981-8
GNU General Public License v3.0
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Use of 5' mismatch reads in predict #31

Closed ericmalekos closed 1 year ago

ericmalekos commented 1 year ago

This is just a question about the implementation of the predict function. Say I have para.py as offdict = {27: 11, 'm0': {27: 12}}

But after examination I decide to remove the 5' mismatch reads from the analysis. If I edit para.py to: offdict = {27: 11}

Is that going to ignore or include the 5' mismatch reads? I don't want to include them, should I do something else? e.g. 'm0':{}

Thank you!

zhpn1024 commented 1 year ago

I think it should be in this way: offdict = {27: 11, 'm0': {}}