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zifanzhu / MicroPro

A microbial profiling framework for metagenomic analysis
GNU General Public License v3.0
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terminate called after throwing an instance of 'std::out_of_range' what(): basic_string::substr: __pos (which is 1) > this->size() (which is 0) #4

Open TheBiotech42 opened 3 years ago

TheBiotech42 commented 3 years ago

When trying to run the viral-pip pipeline I get stuck at step 2 because of this error:

terminate called after throwing an instance of 'std::out_of_range'
  what():  basic_string::substr: __pos (which is 1) > this->size() (which is 0)

This seems to be an error with the subtring command. I am using centrifuge 1.0.4.

thanks for your help!

zifanzhu commented 3 years ago

Hi there,

Thanks for your question! Could you please share with me the full centrifuge log file?