the input 'DDDDDD.sckmer_allowed.tsv' is presumed to contain a subset of the SNPs that are known to occur only in just one species
example DB build
time /path/to/sckmerdb_build *.sckmer_allowed.tsv > ../db.bin
where
ls | sort | head
100002.sckmer_allowed.tsv
100002.sckmer_profiles.tsv
100003.sckmer_allowed.tsv
100003.sckmer_profiles.tsv
...
note that the 'DDDDDD.sckmer_profiles.tsv' input is still required and will be automatically located given 'DDDDDD.sckmer_allowed.tsv' on the command line
the input 'DDDDDD.sckmer_allowed.tsv' is presumed to contain a subset of the SNPs that are known to occur only in just one species
example DB build
where
note that the 'DDDDDD.sckmer_profiles.tsv' input is still required and will be automatically located given 'DDDDDD.sckmer_allowed.tsv' on the command line