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zjshi / gt-pro

MIT License
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now multithreading works even for a single sample #21

Closed boris-dimitrov closed 4 years ago

boris-dimitrov commented 5 years ago

there is also a win when running multiple samples

approximately 14% perf boost across the board due to elimination of tail effects on top of the 14% from canonical kmers

now running at 1.4 million reads/sec (24 cores)

NOTE This has been refactored in (essentially superceded by) https://github.com/zjshi/gt-pro2.0/pull/27

boris-dimitrov commented 4 years ago

Refactored and superceded by https://github.com/zjshi/gt-pro2.0/pull/27 --- feel free to review that one instead.