zjshi
commented
3 years ago The input file need to be decompressed first to parse.
Closed snayfach closed 3 years ago
zjshi
commented
3 years ago The input file need to be decompressed first to parse.
$ python3 scripts/gtp_parse.py --dict variants_main.covered.hq.snp_dict.tsv --in SRR413665_2gtpro20190723_881species.tsv.gz --v2 Traceback (most recent call last): File "scripts/gtp_parse.py", line 110, in
main()
File "scripts/gtp_parse.py", line 105, in main
gtp_array = read_gtp_out(gtp_fpath, args['ver_2'])
File "scripts/gtp_parse.py", line 23, in read_gtp_out
for line in fh:
File "/usr/common/software/python/3.7-anaconda-2019.10/lib/python3.7/codecs.py", line 322, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte