Closed bsmith89 closed 1 year ago
Hey Byron, thanks for reporting this issue. I have seen other reports on cl 1067 error, which is seemingly HPC and gxx related. I also found using -C flag to specify a writable location could consistently solve the problem on my side. Please see a previous thread for more details: issue #44 . Sorry for missing your comment. Github (or I) messed up my notification for this repo somehow. If I haven't got back to you next time, please pin me at zhoushihn@gmail.com.
Closing it for now, please feel free to reopen it if the problem emerges again.
I was getting the dreaded
[ERROR] Error writing output data/reads/SRR15089604/r2.proc.gtpro_raw.gz.tsv.gz cl 1067
with some of my Docker/Singularity images for GT-Pro but not others.I seem to have solved the issue by switching from the mambaforge base image
condaforge/mambaforge:4.11.0-4
toubuntu:18.04
, suggesting that it may be the g++ version that matters.Any idea why?