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zjshi / gt-pro

MIT License
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Optimize.py does not allow for outdir specification #50

Open sophiejwalton opened 1 year ago

sophiejwalton commented 1 year ago

Hi,

I am using the optimize.py function from gt-pro-static. I am on a cluster system, and for some reason the build function is not working super well on it. Although the doc string says that optimize.py has an --out argument, it is not working when I try to used it.

Screen Shot 2023-02-10 at 2 57 15 PM
zjshi commented 1 year ago

Hi sophiejwalton, unfortunately optimize.py does not have a --out argument. Could you please try --tmp to see if it works for your case? I apologize for my delayed response!

mengqingren commented 1 year ago

Hello, Dr, if i have many samples to run, dose it mean that i will run "GT_Pro optimize" for every sample?

zjshi commented 1 year ago

@mengqingren, not necessarily unless each sample is going to be run with a different hardware configuration.