Open alienzj opened 11 months ago
➤ cat -p s__Bifidobacterium_longum_gtpro_db/temp/inspec_eval/100001_kmer_profiles.log (metagenotyping-env)
db_val s__Bifidobacterium_longum_gtpro_db/temp/extract/100001-snp-kmer.tsv 32
program reads a list of kmer pools for checking kmer uniqueness: s__Bifidobacterium_longum_gtpro_db/temp/inspec_eval/100001.list
DB loading OK!
Hi, @zjshi ,
Below was what I did when followed your protocol paper: "Identifying species-specific k-mers for fast and accurate metagenotyping with Maast and GTPro":
maast genomes
gt-pro build
Then when take a look on "logs/s__Bifidobacterium_longum/s__Bifidobacterium_longum.gtpro_build.log":
May I know any suggestions?