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zjunlp / OntoProtein

[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
MIT License
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Question: What is the evaluation metric for protein function classification? #31

Closed boram915 closed 7 months ago

boram915 commented 8 months ago

Hello, I want to know what evaluation metric is used for protein function classification. I scrutinized the paper and code, but could not found how it was evaluated. In the paper I found the description "4% improvement with transductive setting ..." but still cannot understand what is the percentage for. I'd appreciate your reply.

Alexzhuan commented 8 months ago

Hi, We use evaluation metric F1 max for protein function prediction, which have been used in CAFA.

zxlzr commented 7 months ago

hi, do you have further questions?