It's best to have a sane experimental design written out before more simulations are carried out so that I don't waste (any more) time writing simulations that are useless.
Sex Rate Simulations
10k individuals
10 loci (SSR); 6-10 alleles/locus; mutation rate: 1e-5
10k, 1k, 100 loci (SNP)
Rates of Sexual reproduction: 0.0, 0.0001, 0.0005, 0.001, 0.005, 0.01, 0.05, 0.1, 0.5, 1.0
10k generations
10 replicates
Each of these will have 100 different starting values for allele frequencies, which will result in 100 seeds * 10 rates of sex * 10 replicates = 10k data sets.
In my previous simulations, I sampled 10, 25, 50, and 100 individuals from each data set and calculated rD.
grunwald
commented
8 years ago
It's best to have a sane experimental design written out before more simulations are carried out so that I don't waste (any more) time writing simulations that are useless.
Sex Rate Simulations
Each of these will have 100 different starting values for allele frequencies, which will result in 100 seeds * 10 rates of sex * 10 replicates = 10k data sets.
In my previous simulations, I sampled 10, 25, 50, and 100 individuals from each data set and calculated rD.